PREFACE
PART Ⅰ PRIOR KNOWLEDGE
Chapter 1 EDITING AND MANAGING FILE
1.1 LOGIN AND LOGOUT
1.1.1 Login and Logout
1.1.2 File andCommand
1.1.3 Set Up
1.2 EDITOR vi
1.2.1 Login and Logout
1.2.2 Two Statuses
1.2.3 Command
1.3 MANAGING FILE
1.3.1 Login/Logout
1.3.2 Create/Delete
1.3.3 List/Read
1.3.4 Editing File
1.3.5 Grep/Find
1.3.6 Check
1.3.7 Encode
1.3.8 Crypt
1.3.9 Tar
1.3.10 Compress
1.3.11 Symbols
1.3.12 Echo
1.3.13 Awk‘{...}'（Aho, Weinberger and Kernighan）
1.3.14 Print
1.3.15 Calculator bc
1.3.16 Format Converting
Chapter 2 ENVIRONMENT
2.1 KERNEL AND SHELL
2.1.1 Three Layers: User-shell-kernel
2.1.2 Four Kinds of Shells
2.1.3 Shell Tree and Top-level Directories
2.2 FILEPERMISSION
2.2.1 Permission
2.2.2 Change Mode
2.2.3 Default Perrrussion in the cshrc File
2.3 CUSTOMIZING ENVIRONMENT
2.3.1 User's Environment Files
2.3.2 How to Edit Environment Files
2.3.3 Set Up in .cshrc File
2.4 INTERNET IN UNIX SYSTEM
2.4.1 Internet Program in Unix
2.4.2 Email
2.4.3 FTP
2.4.4 Telnet
2.5 MANAGING SYSTEM
2.6 CUSTOMIZING NET SERVER
2.6.1 Three Commands
2.6.2 SevenFiles
Chapter 3 SHELL SCRIPT
3.1 WHATISSCRIPT
3.2 SHELL SCRIPT LANGUAGE
3.2.1 Shell Variable
3.2.2 Operator
3.2.3 Control
3.2.4 Function
3.2.5 110
3.2.6 Access to Database or Another Shell Script
Chapter 4 COMPILING,DEBUG AND RUNNING
4.1 COMPILING A SIMPLE SOURCE CODE
4.1.1 Compiling Process
4.1.2 Compiling Command and Its Options
4.2 MAKEFILE AND COMMAND:MAKE
4.2.1 The Static Library and Dynamic Library
……
PART Ⅱ PROTEIN MOLECULAR DYNAMICS
PART Ⅲ FULL ELECTRON STRUCTURE CALCULATION OF PROTEIN
Answer for Some Programs
INDEX
REFERENCES
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